| official-upstream-patch.patch |
ajax/ajaxdb/ajtextdb.c | 8
ajax/core/ajarch.h | 3
ajax/core/ajfeatread.c | 16 -
ajax/core/ajfeatwrite.c | 3
ajax/core/ajfmt.c | 527 +++++++++++++++++++++++++++++++++++++-
ajax/core/ajnam.c | 37 ++
ajax/core/ajnexus.c | 213 +++++++++++++--
ajax/core/ajpat.c | 4
ajax/core/ajquery.c | 29 +-
ajax/core/ajrange.c | 21 +
ajax/core/ajseqabi.c | 2
ajax/core/ajseqread.c | 179 ++++++++----
ajax/ensembl/ensdatabaseadaptor.c | 53 ++-
ajax/ensembl/ensdatabaseadaptor.h | 2
ajax/ensembl/ensregistry.c | 204 ++++++--------
ajax/ensembl/ensregistry.h | 2
emboss/cacheensembl.c | 5
emboss/cirdna.c | 16 -
emboss/data/Efeatures.gff3protein | 12
emboss/data/Etcode.dat | 1
emboss/dbiflat.c | 385 +++++++++++++++++++++++++++
emboss/dbxflat.c | 98 ++++++-
emboss/dbxresource.c | 13
emboss/drfinddata.c | 5
emboss/drfindformat.c | 5
emboss/drfindid.c | 5
emboss/drfindresource.c | 7
emboss/server.ensemblgenomes | 324 +++++++++++++++++++++++
nucleus/embgroup.c | 2
29 files changed, 1899 insertions(+), 282 deletions(-)
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