--- jags-2.0.0.orig/debian/jags.1 +++ jags-2.0.0/debian/jags.1 @@ -0,0 +1,26 @@ +.\" Man page contributed by Dirk Eddelbuettel and GPL'ed +.TH JAGS 1 "15 September 2008" "IARC" +.SH NAME +jags - just another gibbs sampler +.SH SYNOPSIS +.BR jags\ [--debugger]\ scriptfile +.SH DESCRIPTION +.PP +\fIjags\fP is a program for analysis of Bayesian hierarchical models using +Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS. It expects +the model to be described in +.IR scriptfile . +.SH OPTIONS +\fIjags\fP accepts the following options: +.TP 8 +.I \-\-debugger +to run under the default debugger +.RE +.SH SEE ALSO +.IR http://www-fis.iarc.fr/~martyn/software/jags/ +.SH AUTHORS +Martyn Plummer + +This manual page was contributed by Dirk Eddelbuettel + for the Debian GNU/Linux distribution but +may be used by others. --- jags-2.0.0.orig/debian/jags.lintian-overrides +++ jags-2.0.0/debian/jags.lintian-overrides @@ -0,0 +1,3 @@ +jags: non-dev-pkg-with-shlib-symlink usr/lib/libjrmath.so.0.0.0 usr/lib/libjrmath.so +jags: package-name-doesnt-match-sonames libjags2 libjrmath0 +jags: non-dev-pkg-with-shlib-symlink usr/lib/libjags.so.2.0.0 usr/lib/libjags.so --- jags-2.0.0.orig/debian/compat +++ jags-2.0.0/debian/compat @@ -0,0 +1 @@ +5 --- jags-2.0.0.orig/debian/jags.manpages +++ jags-2.0.0/debian/jags.manpages @@ -0,0 +1 @@ +debian/jags.1 --- jags-2.0.0.orig/debian/changelog +++ jags-2.0.0/debian/changelog @@ -0,0 +1,51 @@ +jags (2.0.0-1) unstable; urgency=low + + * New upstream release + + * debian/control: Updated Standards-Version: to current version + + -- Dirk Eddelbuettel Mon, 26 Apr 2010 11:05:20 -0500 + +jags (1.0.4-4) unstable; urgency=low + + * configure: Applied patch by Nobuhiro Iwamatsu to support the + SH architecture (Closes: #561050) + + -- Dirk Eddelbuettel Sun, 13 Dec 2009 19:26:57 -0600 + +jags (1.0.4-3) unstable; urgency=low + + * debian/control: Tighten Build-Depends to libltdl-dev (>= 2.2.6b) + + -- Dirk Eddelbuettel Sat, 12 Dec 2009 16:34:46 -0600 + +jags (1.0.4-2) unstable; urgency=low + + * debian/control: Add Build-Depends: on libltdl3-dev + * debian/rules: call configure with '--without-included-ltdl' to enforce + use of the system ltdl (Closes: #560864) + + -- Dirk Eddelbuettel Sat, 12 Dec 2009 16:18:24 -0600 + +jags (1.0.4-1) unstable; urgency=low + + * New upstream release containing new libltdl/ from libtool 2.2.6b + in regards to CVE-2009-3736[0] (Closes: #559816) + + -- Dirk Eddelbuettel Thu, 10 Dec 2009 22:41:47 -0600 + +jags (1.0.3-2) unstable; urgency=low + + * configure: Applied one-line patch to allow builds on sh architecture. + Thanks to Nobuhiro Iwamatsu for the patch. (Closes: #554347) + + * debian/watch: Addded watch file + + -- Dirk Eddelbuettel Tue, 03 Nov 2009 22:10:31 -0600 + +jags (1.0.3-1) unstable; urgency=low + + * Initial build + + -- Dirk Eddelbuettel Mon, 01 Sep 2008 20:04:18 -0500 + --- jags-2.0.0.orig/debian/rules +++ jags-2.0.0/debian/rules @@ -0,0 +1,8 @@ +#!/usr/bin/make -f + +override_dh_auto_configure: + dh_auto_configure -- --without-included-ltdl + +%: + dh $@ + --- jags-2.0.0.orig/debian/copyright +++ jags-2.0.0/debian/copyright @@ -0,0 +1,60 @@ +This is the Debian GNU/Linux jags package. Jags is 'Just Another Gibbs +Sampler', a program for analysis of Bayesian Graphical models by Gibbs +Sampling. Jags was written by Martyn Plummer. + +This package was created by Dirk Eddelbuettel . +The sources were downloaded from the sources + http://www-fis.iarc.fr/~martyn/software/jags/ + +Copyright and License information: + +1) JAGS itself: +Copyright (C) 2002 - 2008 Martyn Plummer +License: GPL + +2) The libltdl/ directory containing GNU libltdl (a system independent +dlopen wrapper for GNU libtool): +Copyright (C) 1998 - 2000, 2004 - 2007 Free Software Foundation, Inc. +Originally by Thomas Tanner +License: LGPL + +3) The src/jrmath/ directory containing a modified interface to GNU R +(where Martyn Plummer is a member of the R Core Development Team) +Copyright (C) 1995, 1996 Robert Gentleman and Ross Ihaka +Copyright (C) 1998-2004 Ross Ihaka and the R Development Core Team +Copyright (C) 1998-2004 The R Development Core Team +Copyright (C) 1998--2005 The R Development Core Team +Copyright (C) 1998 Ross Ihaka +Copyright (C) 1999-2000 The R Development Core Team +Copyright (C) 2000-2001 The R Core Development Team +Copyright (C) 2000-2002 The R Development Core Team +Copyright (C) 2000, 2003 The R Development Core Team +Copyright (C) 2000-2005 The R Development Core Team +Copyright (C) 2000-2006 The R Development Core Team +Copyright (C) 2000-2006 The R Development Core Team +Copyright (C) 2000-2006 The R Development Core Team +Copyright (C) 2000 The R Core Development Team +Copyright (C) 2000 The R Development Core Team +Copyright (C) 2002-2004 The R Foundation +Copyright (C) 2003-2004 The R Foundation +Copyright (C) 2003-2004 The R Foundation +Copyright (C) 2003 The R Foundation +Copyright (C) 2004 Morten Welinder +Copyright (C) 2004 The R Foundation +Copyright (C) 2004 The R Foundation +Copyright (C) 2005-6 Morten Welinder +Copyright (C) 2005-6 The R Foundation +Copyright (C) 2005 The R Foundation +Copyright (C) 2006 The R Core Development Team +Copyright (C) 2006 The R Development Core Team +License: GPL + +4) For the src/modules/base/rngs/MersenneTwisterRNG.cc +Copyright (C) 1997, 1999 Makoto Matsumoto and Takuji Nishimura. +License: GPL + + +On a Debian GNU/Linux system, the GPL and LGPL licenses are included +in the files /usr/share/common-licenses/GPL and +/usr/share/common-licenses/LGPL. + --- jags-2.0.0.orig/debian/watch +++ jags-2.0.0/debian/watch @@ -0,0 +1,2 @@ +version=3 +http://www-fis.iarc.fr/~martyn/software/jags/JAGS-(.+)\.tar\.gz --- jags-2.0.0.orig/debian/control +++ jags-2.0.0/debian/control @@ -0,0 +1,23 @@ +Source: jags +Section: math +Priority: optional +Maintainer: Dirk Eddelbuettel +Build-Depends: debhelper (>= 7.0.50~), gfortran, liblapack-dev, libltdl-dev (>= 2.2.6b) +Standards-Version: 3.8.4 +Homepage: http://www-fis.iarc.fr/~martyn/software/jags/ + +Package: jags +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: Just Another Gibbs Sampler for Bayesian MCMC simulation + JAGS is Just Another Gibbs Sampler. It is a program for analysis of + Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) + simulation not wholly unlike BUGS. + . + JAGS was written with three aims in mind: + * To have an engine for the BUGS language that runs on Unix + * To be extensible, allowing users to write their own functions, + distributions and samplers. + * To be a plaftorm for experimentation with ideas in Bayesian modelling + + --- jags-2.0.0.orig/debian/source/format +++ jags-2.0.0/debian/source/format @@ -0,0 +1 @@ +1.0