--- octave-bioinfo-0.1.2.orig/debian/compat +++ octave-bioinfo-0.1.2/debian/compat @@ -0,0 +1 @@ +7 --- octave-bioinfo-0.1.2.orig/debian/copyright +++ octave-bioinfo-0.1.2/debian/copyright @@ -0,0 +1,23 @@ +Format-Specification: http://svn.debian.org/wsvn/dep/web/deps/dep5.mdwn?rev=48 +Upstream-Name: bioinfo package for Octave +Upstream-Maintainer: Bill Denney +Upstream-Source: http://octave.sourceforge.net/bioinfo/index.html + +Files: debian/* +Copyright: © 2008 Olafur Jens Sigurdsson +License: GPL-3+ + +Files: inst/* +Copyright: © (C) 2008 Bill Denney +License: GPL-2+ + +License: GPL-2+ + On Debian systems, the complete text of the GNU General Public + License, version 2, can be found in the file + `/usr/share/common-licenses/GPL-2'. + +License: GPL-3+ + On Debian systems, the complete text of the GNU General Public + License, version 3, can be found in the file + `/usr/share/common-licenses/GPL-3'. + --- octave-bioinfo-0.1.2.orig/debian/changelog +++ octave-bioinfo-0.1.2/debian/changelog @@ -0,0 +1,61 @@ +octave-bioinfo (0.1.2-2) unstable; urgency=low + + [ Rafael Laboissiere ] + * debian/control: Build-depend on octave-pkg-dev >= 0.7.0, such that the + package is built against octave3.2 + + -- Thomas Weber Sun, 31 Jan 2010 23:38:49 +0100 + +octave-bioinfo (0.1.2-1) unstable; urgency=low + + * New upstream release + * debian/control: + + (Standards-Version): Bump to 3.8.1 (no changes needed) + + (Architecture): all + + (Depends): Add ${misc:Depends} + + (Vcs-Git, Vcs-Browser): Adjust to new Git repository + * debian/source.lintian-overrides: Override Lintian warnings + build-depends-without-arch-dep regarding debhelper and octave-pkg-dev + * debian/copyright: + + Use DEP5 URL in Format-Specification + + Use separate License stanzas for instructing about the location of + the different licenses used in the package + + -- Rafael Laboissiere Sun, 24 May 2009 10:51:52 +0200 + +octave-bioinfo (0.1.1-2) unstable; urgency=low + + [ Rafael Laboissiere ] + * debian/copyright: Add header + * debian/control: Bump build-dependency on octave-pkg-dev to >= 0.6.4, + such that the package is built with the versioned packages directory + + [ Thomas Weber ] + * Upload to unstable + + -- Thomas Weber Sat, 28 Mar 2009 22:22:06 +0100 + +octave-bioinfo (0.1.1-1) experimental; urgency=low + + [ Ólafur Jens Sigurðsson ] + * New upstream release + + [ Rafael Laboissiere ] + * debian/rules: Use debian/clean instead of manually cleaning files + * debian/compat, debian/control: Bump build-dependency on debhelper to + >= 7.0.0, otherwise debian/clean is moot + * debian/clean: New file + * debian/control: Bump Standards-Version to 3.8.0 (no changes needed) + + [ Thomas Weber ] + * Bump dependency on octave-pkg-dev to 0.6.1, to get the experimental + version + + -- Thomas Weber Tue, 02 Dec 2008 20:42:36 +0100 + +octave-bioinfo (0.1.0-1) unstable; urgency=low + + [ Olafur Jens Sigurdsson ] + * Initial release. (Closes: #480762) + + -- Rafael Laboissiere Wed, 21 May 2008 08:42:53 +0000 --- octave-bioinfo-0.1.2.orig/debian/clean +++ octave-bioinfo-0.1.2/debian/clean @@ -0,0 +1 @@ +src/Makeconf src/config.log src/config.status --- octave-bioinfo-0.1.2.orig/debian/control +++ octave-bioinfo-0.1.2/debian/control @@ -0,0 +1,26 @@ +Source: octave-bioinfo +Section: math +Priority: optional +Maintainer: Debian Octave Group +Uploaders: Ólafur Jens Sigurðsson , + Rafael Laboissiere , + Thomas Weber +DM-Upload-Allowed: yes +Build-Depends: debhelper (>= 7.0.0), cdbs, octave-pkg-dev (>= 0.7.0) +Standards-Version: 3.8.1 +Homepage: http://octave.sourceforge.net/bioinfo/ +Vcs-Git: git://git.debian.org/git/pkg-octave/octave-bioinfo.git +Vcs-Browser: http://git.debian.org/?p=pkg-octave/octave-bioinfo.git + +Package: octave-bioinfo +Architecture: all +Depends: ${misc:Depends}, ${shlibs:Depends}, ${octave:Depends} +Description: bioinformatic functions for Octave + This package provides functions to do work in bioinformatics in + Octave, a numerical computation software. It contains functions to + convert amino acid characters into integers (aa2int), convert between + amino acid representations (aminolookup), cleave peptides (cleave), + convert integers into amino acid characters (int2aa) and reverse a + nucleotide sequence (seqreverse). + . + This Octave add-on package is part of the Octave-Forge project. --- octave-bioinfo-0.1.2.orig/debian/source.lintian-overrides +++ octave-bioinfo-0.1.2/debian/source.lintian-overrides @@ -0,0 +1,2 @@ +octave-bioinfo source: build-depends-without-arch-dep debhelper +octave-bioinfo source: build-depends-without-arch-dep octave-pkg-dev --- octave-bioinfo-0.1.2.orig/debian/watch +++ octave-bioinfo-0.1.2/debian/watch @@ -0,0 +1,3 @@ +version=3 +http://octave.sourceforge.net/packages.html \ + http://downloads\.sourceforge\.net/octave/bioinfo-([\d.]+)\.tar\.gz\?download --- octave-bioinfo-0.1.2.orig/debian/rules +++ octave-bioinfo-0.1.2/debian/rules @@ -0,0 +1,4 @@ +#!/usr/bin/make -f +# -*- makefile -*- + +include /usr/share/cdbs/1/class/octave-pkg.mk