r-cran-rocr (1.0-4-1) debian-dir only changes

Summary

 debian/README.Debian          |    7 +++++
 debian/changelog              |   51 ++++++++++++++++++++++++++++++++++++++++++
 debian/compat                 |    1 
 debian/control                |   50 +++++++++++++++++++++++++++++++++++++++++
 debian/copyright              |   43 +++++++++++++++++++++++++++++++++++
 debian/rules                  |   10 ++++++++
 debian/upstream-metadata.yaml |   22 ++++++++++++++++++
 debian/watch                  |    3 ++
 8 files changed, 187 insertions(+)

    
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Patch contents

--- r-cran-rocr-1.0-4.orig/debian/watch
+++ r-cran-rocr-1.0-4/debian/watch
@@ -0,0 +1,3 @@
+version=3
+http://cran.r-project.org/src/contrib/ROCR_([-0-9\.]*)\.tar\.gz
+
--- r-cran-rocr-1.0-4.orig/debian/rules
+++ r-cran-rocr-1.0-4/debian/rules
@@ -0,0 +1,10 @@
+#!/usr/bin/make -f
+# 							-*- makefile -*-
+# debian/rules file for the Debian/GNU Linux r-cran-qtl package
+# Copyright 2003-2006 by Dirk Eddelbuettel <edd@debian.org>
+
+include /usr/share/R/debian/r-cran.mk
+
+# Require a number equal or superior than the R version the package was built with.
+install/r-$(debRreposname)-$(cranName)::
+	echo "R:Depends=r-base-core (>= $(shell R --version | head -n1 | perl -ne 'print / +([0-9]\.[0-9]+\.[0-9])/'))" >> debian/r-$(debRreposname)-$(cranName).substvars
--- r-cran-rocr-1.0-4.orig/debian/upstream-metadata.yaml
+++ r-cran-rocr-1.0-4/debian/upstream-metadata.yaml
@@ -0,0 +1,22 @@
+Contact:
+ - Tobias Sing <tobias.sing@mpi-sb.mpg.de>
+ - Oliver Sander <osander@mpi-sb.mpg.de>
+DOI: 10.1093/bioinformatics/bti623
+Gallery: http://rocr.bioinf.mpi-sb.mpg.de/rocr_gallery.html
+Homepage: http://rocr.bioinf.mpi-sb.mpg.de
+Name: ROCR
+PMID: 16096348
+Reference: |
+ author: Sing, Tobias and Sander, Oliver and Beerenwinkel, Niko and Lengauer, Thomas
+ title: ROCR: visualizing classifier performance in R
+ journal: Bioinformatics
+ volume: 21
+ number: 20
+ pages: 3940-3941
+ year: 2005
+ URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/21/20/3940
+ eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/21/20/3940.pdf
+Screenshot:
+ - http://rocr.bioinf.mpi-sb.mpg.de/plot1.jpg
+ - http://rocr.bioinf.mpi-sb.mpg.de/plot.jpg
+Watch: http://cran.r-project.org/src/contrib/ROCR_([-0-9\.]*)\.tar\.gz
--- r-cran-rocr-1.0-4.orig/debian/control
+++ r-cran-rocr-1.0-4/debian/control
@@ -0,0 +1,50 @@
+Source: r-cran-rocr
+Section: gnu-r
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
+Uploaders: Steffen Moeller <moeller@debian.org>, Charles Plessy <plessy@debian.org>
+Build-Depends: debhelper (>= 7), cdbs, r-base-dev (>= 2.10.0), r-cran-gplots, r-cran-gtools, r-cran-gdata
+Standards-Version: 3.8.4
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-rocr/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-rocr/trunk/
+Homepage: http://rocr.bioinf.mpi-sb.mpg.de
+
+Package: r-cran-rocr
+Architecture: all
+Depends: ${misc:Depends}, ${R:Depends}, r-cran-gplots, r-cran-gtools, r-cran-gdata
+Description: GNU R package to prepare and display ROC curves
+ ROC graphs, sensitivity/specificity curves, lift charts,
+ and precision/recall plots are popular examples of trade-off
+ visualizations for specific pairs of performance measures. ROCR is a
+ flexible tool for creating cutoff-parametrized 2D performance curves
+ by freely combining two from over 25 performance measures (new
+ performance measures can be added using a standard interface).
+ Curves from different cross-validation or bootstrapping runs can be
+ averaged by different methods, and standard deviations, standard
+ errors or box plots can be used to visualize the variability across
+ the runs. The parametrization can be visualized by printing cutoff
+ values at the corresponding curve positions, or by coloring the
+ curve according to cutoff. All components of a performance plot can
+ be quickly adjusted using a flexible parameter dispatching
+ mechanism. Despite its flexibility, ROCR is easy to use, with only
+ three commands and reasonable default values for all optional
+ parameters.
+ .
+ ROCR features: ROC curves, precision/recall plots, lift charts, cost
+ curves, custom curves by freely selecting one performance measure for the
+ x axis and one for the y axis, handling of data from cross-validation
+ or bootstrapping, curve averaging (vertically, horizontally, or by
+ threshold), standard error bars, box plots, curves that are color-coded
+ by cutoff, printing threshold values on the curve, tight integration
+ with Rs plotting facilities (making it easy to adjust plots or to combine
+ multiple plots), fully customizable, easy to use (only 3 commands).
+ .
+ Performance measures that ROCR knows: Accuracy, error rate, true
+ positive rate, false positive rate, true negative rate, false negative
+ rate, sensitivity, specificity, recall, positive predictive value,
+ negative predictive value, precision, fallout, miss, phi correlation
+ coefficient, Matthews correlation coefficient, mutual information, chi
+ square statistic, odds ratio, lift value, precision/recall F measure,
+ ROC convex hull, area under the ROC curve, precision/recall break-even
+ point, calibration error, mean cross-entropy, root mean squared error,
+ SAR measure, expected cost, explicit cost.
--- r-cran-rocr-1.0-4.orig/debian/copyright
+++ r-cran-rocr-1.0-4/debian/copyright
@@ -0,0 +1,43 @@
+Name      :  ROCR
+Contact   :  Tobias Sing <tobias.sing@mpi-sb.mpg.de>
+Source    :  http://cran.r-project.org/src/contrib/ROCR_1.0-4.tar.gz
+
+
+Copyright :  © 2005-7 Tobias Sing, Oliver Sander, Niko Beerenwinkel and Thomas Lengauer.
+License   :  GPL-2+
+
+     This is free software; you can redistribute it and/or modify
+     it under the terms of the GNU General Public License as published by
+     the Free Software Foundation; either version 2 of the License, or
+     (at your option) any later version.
+     
+     This program is distributed in the hope that it will be useful,
+     but WITHOUT ANY WARRANTY; without even the implied warranty of
+     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+     GNU General Public License for more details.
+     
+     You should have received a copy of the GNU General Public License along
+     with this program; if not, write to the Free Software Foundation, Inc.,
+     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+
+Comment: Limited warranty
+
+ These datasets and software are provided in good faith, but none of
+ the authors, publishers nor distributors warrant their accuracy
+ nor can be held responsible for the consequences of their use.
+
+On a Debian GNU/Linux system, the GNU General Public License version 2 is
+included in the file ‘/usr/share/common-licenses/GPL-2’.
+
+The package was renamed from its upstream name 'ROCR' to 'r-cran-rocr'
+to highlight the fact that is it a package for R within the CRAN archive
+and the policy to use lower case characters for package names.
+
+
+Files: debian/*
+Copyright: © 2008 Steffen Moeller <moeller@debian.org>
+License: same as ROCR
+
+This package was created by Steffen Moeller <moeller@debian.org>,
+based on work for the r-cran-rodbc package of Dirk
+Eddelbuettel <edd@debian.org>.
--- r-cran-rocr-1.0-4.orig/debian/README.Debian
+++ r-cran-rocr-1.0-4/debian/README.Debian
@@ -0,0 +1,7 @@
+Notes on how this package is tested.
+────────────────────────────────────
+
+After building on the maintainer's computer, this package was locally installed
+and the library loaded into R in order to confirm its integrity.
+
+ -- Charles Plessy <plessy@debian.org>  Wed, 03 Feb 2010 14:28:04 +0900
--- r-cran-rocr-1.0-4.orig/debian/changelog
+++ r-cran-rocr-1.0-4/debian/changelog
@@ -0,0 +1,51 @@
+r-cran-rocr (1.0-4-1) unstable; urgency=low
+
+  * New upstream release.
+  * Incremented Standards-Version (debian/control) to reflect compliance
+    with Policy 3.8.4.
+  * Require a number equal or superior than the R version the package was built
+    with, using a R:Depends substvar (debian/control, debian/rules).
+  * Added notes to explain how this package is tested (debian/README.Debian).
+
+ -- Charles Plessy <plessy@debian.org>  Wed, 03 Feb 2010 12:59:59 +0900
+
+r-cran-rocr (1.0-3-3) unstable; urgency=low
+
+  * New upstream version.
+  * Explicitly setting dependency to latest R because of the new R
+    help system.
+
+ -- Steffen Moeller <moeller@debian.org>  Sat, 24 Oct 2009 17:04:38 +0900
+
+r-cran-rocr (1.0-2-2) unstable; urgency=low
+
+  * Rebuilt against R 2.10.0 because of changes in the documentation system.
+  * Converted debian/copyright to experimental machine-readable format.
+  * Updated to Policy 3.8.3:
+    - Changed section to gnu-r (debian/control).
+    - Incremented Standards-Version (debian/control).
+  * Switched to Debhelper 7 (debian/control, debian/compat).
+  * Removed ${shlibs:Depends} and added ${misc:Depends} (debian/compat).
+  * Added VCS archive metadata (debian/control).
+  * Documented various upstream information in debian/upstream-metadata.yaml
+  * Added myself to the uploaders (debian/control).
+
+ -- Charles Plessy <plessy@debian.org>  Sat, 24 Oct 2009 17:04:38 +0900
+
+r-cran-rocr (1.0-2-1.1) unstable; urgency=low
+
+  * Non-maintainer upload
+  
+  * debian/watch: Corrected as this is in fact case-sensitive 
+ 
+  * debian/control: Removed myself from uploaders as
+     - Steffen never asked me whether I wanted to be included 
+     - Steffen never removed me despite repeated requests to do so
+
+ -- Dirk Eddelbuettel <edd@debian.org>  Sat, 29 Nov 2008 13:13:47 -0600
+
+r-cran-rocr (1.0-2-1) unstable; urgency=low
+
+  * Initial release (closes: #492524).
+
+ -- Steffen Moeller <moeller@debian.org>  Sun, 27 Jul 2008 00:34:06 +0200
--- r-cran-rocr-1.0-4.orig/debian/compat
+++ r-cran-rocr-1.0-4/debian/compat
@@ -0,0 +1 @@
+7